Installation

Windows setup

The newest version of MaxQuant (1.5.0.0) requires a 64 bit system with Windows A 64Bit machine is preferred by MaxQuant.

Make sure MaxQuant 1.4.1.2, .NET 4.5 and MSFileReader are installed.

Download python 3.4 or newer from python.org (the Windows x86-64 MSI installer). Make sure the python executables are added to the path.

Open a terminal and execute

pip install mqrun

Todo

Get rid of those error dialogs!

Add fasta files to Andromeda?

Linux setup

Configure samba